My work spans medical imaging, spatial omics, and computer vision.

Selected Publications

• Unifying AI-assisted scientific discovery around exploration, hypothesis generation, and testing
  M. M. Hasib, S. Jo, H. Sinha, et al.
  Patterns, 101660, 2026 · Review
  
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• STiLE: Automated Tissue Microarray Dearraying for Spatial Transcriptomics
  H. Sinha, A. Das, Y.-C. Chiu, S.-J. Gao, and Y. Huang
  Bioinformatics, 2026
  
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• Solving the Pervasive Problem of Protocol Non-Compliance in MRI using an Open-Source tool mrQA
  H. Sinha and P. R. Raamana
  Neuroinformatics, 2024
  
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• MRdataset: A unified and user-friendly interface to medical imaging datasets
  H. Sinha and P. R. Raamana
  Journal of Open Source Software 9(95), 6269, 2024
  
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• Towards Shape-regularized Learning for Mitigating Texture Bias in CNNs
  H. Sinha and A. Kovashka
  ACM International Conference on Multimedia Retrieval, 2023 · Oral session
  
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• Cycle Consistent Embedding of 3D Brains with Auto-Encoding Generative Adversarial Networks
  S. Xing, H. Sinha, and S.-J. Hwang
  International Conference on Medical Imaging with Deep Learning, 2021
  
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Manuscripts Under Review

• Hybrid novice–AI system achieves expert-level performance in intraoperative ischemia detection
  N. Murali, A. I. Mina, H. Sinha, J. W. Anderson, Y. Raka, H.-C. Chang, H. K. Amiri, P. D. Thirumala, K. Batmanghelich, and S. Visweswaran
  Under review
  
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• spatiAlytica: Viewer-Grounded Multimodal Agentic System for Interactive Spatial Omics Analysis
  A. Das, K. Zhang, J. Song, M. Han, A. Chen, W. Meng, H. Galloway, P.-Y. Chen, S. Jo, Z. Liu, M. M. Hasib, A. Officer, H. Sinha, Y.-C. Chiu, S.-J. Gao, L. Li, and Y. Huang
  Under review
  
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• Spatial Single-Cell Atlas Reveals KSHV-Driven Broad Cellular Reprogramming, Progenitor Expansion, Immune and Vascular Remodeling in Kaposi’s Sarcoma
  W. Meng, A. Das, H. Sinha, R. Naous, P. M. Bracci, M. McGrath, Y. Huang, and S.-J. Gao
  Under review · bioRxiv preprint, 2025
  
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