Harsh Sinha

Harsh Sinha

Ph.D. Student in Intelligent Systems

University of Pittsburgh


Research Highlights

  • 2026: Co-authored a Patterns review on AI-assisted scientific discovery. STiLE, a tool for tissue microarray dearraying in spatial transcriptomics, was published in Bioinformatics.
  • 2024: mrQA published in Neuroinformatics and MRdataset published in the Journal of Open Source Software.
  • 2023: Shape regularized learning work presented at ICMR (oral session).

Open source: mrQA · MRdataset


Interests

  • Computer Vision
  • Medical Imaging
  • Spatial Omics
  • Machine Learning

Education

  • Ph.D. in Intelligent Systems

    University of Pittsburgh

  • M.E. in Software Systems, 2020

    BITS Pilani

  • B.E.(Hons.) Electrical and Electronics Engg, 2018

    BITS Pilani

Current Work

My work spans medical imaging, spatial omics, and computer vision.

Selected Publications

  • Unifying AI-assisted scientific discovery around exploration, hypothesis generation, and testing
    M. M. Hasib, S. Jo, H. Sinha, et al.
    Patterns, 101660, 2026 · Review
  • STiLE: Automated Tissue Microarray Dearraying for Spatial Transcriptomics
    H. Sinha, A. Das, Y.-C. Chiu, S.-J. Gao, and Y. Huang
    Bioinformatics, 2026
  • Solving the Pervasive Problem of Protocol Non-Compliance in MRI using an Open-Source tool mrQA
    H. Sinha and P. R. Raamana
    Neuroinformatics, 2024
  • MRdataset: A unified and user-friendly interface to medical imaging datasets
    H. Sinha and P. R. Raamana
    Journal of Open Source Software 9(95), 6269, 2024
  • Towards Shape-regularized Learning for Mitigating Texture Bias in CNNs
    H. Sinha and A. Kovashka
    ACM International Conference on Multimedia Retrieval, 2023 · Oral session
  • Cycle Consistent Embedding of 3D Brains with Auto-Encoding Generative Adversarial Networks
    S. Xing, H. Sinha, and S.-J. Hwang
    International Conference on Medical Imaging with Deep Learning, 2021

Manuscripts Under Review

  • Hybrid novice–AI system achieves expert-level performance in intraoperative ischemia detection
    N. Murali, A. I. Mina, H. Sinha, J. W. Anderson, Y. Raka, H.-C. Chang, H. K. Amiri, P. D. Thirumala, K. Batmanghelich, and S. Visweswaran
    Under review
  • spatiAlytica: Viewer-Grounded Multimodal Agentic System for Interactive Spatial Omics Analysis
    A. Das, K. Zhang, J. Song, M. Han, A. Chen, W. Meng, H. Galloway, P.-Y. Chen, S. Jo, Z. Liu, M. M. Hasib, A. Officer, H. Sinha, Y.-C. Chiu, S.-J. Gao, L. Li, and Y. Huang
    Under review

Software

mrQA · GitHub
MRdataset · GitHub

Download the full CV

Earlier Publications

Quickly discover relevant content by filtering publications.

Learning to Enhance Visual Quality via Hyperspectral Domain Mapping

Deep learning based methods have achieved remarkable success in image restoration and enhancement, but most such methods rely on RGB …

Domain-Aware Unsupervised Hyperspectral Reconstruction for Aerial Image Dehazing

Haze removal in aerial images is a challenging problem due to considerable variation in spatial details and varying contrast. Changes …

HIDeGAN: A Hyperspectral-guided Image Dehazing GAN

Haze removal in images captured from a diverse set of scenarios is a very challenging problem. The existing dehazing methods either …

Text-Convolutional Neural Networks for Fake News Detection in Tweets

With the widespread use of online social networking websites, user generated stories and social network platform have become critical …

Audio Classification using Braided Convolutional Neural Networks

Convolutional Neural Networks (CNNs) work surprisingly well and has helped drastically enhance the state-of-the-art techniques in the …

Past Events

OHBM 2023
AAIC 2023

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